Synthesis and characterization of constrained peptidomimetic dipeptidyl peptidase IV inhibitors: amino-lactam boroalanines

J Med Chem. 2007 May 17;50(10):2391-8. doi: 10.1021/jm061321+. Epub 2007 Apr 26.

Abstract

We describe here the epimerization-free synthesis and characterization of a new class of conformationally constrained lactam aminoboronic acid inhibitors of dipeptidyl peptidase IV (DPP IV; E.C. 3.4.14.5). These compounds have the advantage that they cannot undergo the pH-dependent cyclization prevalent in most dipeptidyl boronic acids that attenuates their potency at physiological pH. For example, D-3-amino-1-[L-1-boronic-ethyl]-pyrrolidine-2-one (amino-D-lactam-L-boroAla), one of the best lactam inhibitors of DPP IV, is several orders of magnitude less potent than L-Ala-L-boroPro, as measured by Ki values (2.3 nM vs 30 pM, respectively). At physiological pH, however, it is actually more potent than L-Ala-L-boroPro, as measured by IC50 values (4.2 nM vs 1400 nM), owing to the absence of the potency-attenuating cyclization. In an interesting and at first sight surprising reversal of the relationship between stereochemistry and potency observed with the conformationally unrestrained Xaa-boroPro class of inhibitors, the L-L diastereomers of the lactams are orders of magnitude less effective than the D-L lactams. However, this interesting reversal and the unexpected potency of the D-L lactams as DPP IV inhibitors can be understood in structural terms, which is explained and discussed here.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / analogs & derivatives*
  • Alanine / chemical synthesis*
  • Alanine / chemistry
  • Biomimetics
  • Boric Acids / chemical synthesis*
  • Boric Acids / chemistry
  • Boronic Acids / chemical synthesis*
  • Boronic Acids / chemistry
  • Dipeptidyl Peptidase 4 / chemistry*
  • Dipeptidyl-Peptidase IV Inhibitors*
  • Humans
  • Hydrogen-Ion Concentration
  • Lactams / chemical synthesis*
  • Lactams / chemistry
  • Models, Molecular
  • Peptides / chemistry*
  • Pyrrolidinones / chemical synthesis*
  • Pyrrolidinones / chemistry
  • Stereoisomerism
  • Structure-Activity Relationship

Substances

  • 3-amino-1-(1-boronic-ethyl)pyrrolidine-2-one
  • Boric Acids
  • Boronic Acids
  • Dipeptidyl-Peptidase IV Inhibitors
  • Lactams
  • Peptides
  • Pyrrolidinones
  • Dipeptidyl Peptidase 4
  • Alanine